In this movie, that takes place three months after MaloMyotismon's defeat, the DigiDestined go up against Diaboromon again. Tai and Matt head back to the Internet to deal with him with Omnimon, while the younger Chosen Children go to deal with the rampage of a swarm of Kuramon (Diaboromon's Fresh form). With the help of Angemon and Angewomon (with T.K. and Kari), Omnimon was able to destroy Diaboromon again, but it turned out to be a trap, as his destruction allowed many more Kuramon to go to the Real World. Things go out of control when the Kuramon in the Real World merge to create a Mega level called Armageddemon, an alternate Mega in Diaboromon's evolutionary line. It is so powerful that neither Omnimon nor Imperialdramon were able to defeat it on their own.

The DigiDestined kids discover another one of their kind living in the United States, who's own Digimon falls victim to a powerful computer virus. In Japan this film was actually split into two parts. Digimon Hurricane Landing!! refers to the first part, and Transcendent Evolution!! The Golden Digimentals refers to the second part.

A year after the events of the first season, a virus Digimon called Diaboromon appears and starts attacking the Internet. The children and their Digimon unite once more in order to prevent him from destroying every communications network on the planet.