The film centers mostly around the personal and professional life of Thomas "Stonewall" Jackson, a brilliant if eccentric Confederate general, from the outbreak of the American Civil War until its halfway point.

Two FBI agents investigating the murder of civil rights workers during the 60s seek to breach the conspiracy of silence in a small Southern town where segregation divides black and white. The younger agent trained in FBI school runs up against the small town ways of his partner, a former sheriff.

Garnet Montrose (Michael Beihn) returns home to West Virginia after suffering horrible facial disfigurement from wounds at the battle of Guadalcanal. He watches his former sweetheart Georgia (Maureen Mueller) from his farm down the road. Garnett is obviously socially withdrawn because of his injuries, and he soon enlists the help of itinerant young farmhand Potter Daventry (Patrick Dempsey) to deliver notes to Georgia. Garnet begins to open up to Potter before he suspects him of delivering more than letters. Potter quickly becomes a major focus in both Garnet and Georgia's lives in this drama taken from the novel by James Purdy.